Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs76398155 | chr16:2945344 | G/T | 0.000162 | 485 | 15.2 | 17.13 | 15.4 | KM Plot |
| THCA | rs764139 | chr16:20743399 | A/G | 3.38E-5 | 490 | 16.38 | 14.47 | 17.65 | KM Plot |
| THCA | rs76414662 | chr2:48077079 | G/A | 1.13E-7 | 486 | 15.3 | 18.33 | 8.27 | KM Plot |
| THCA | rs76421334 | chr6:24489980 | A/C | 3.75E-9 | 485 | 16.37 | 15.63 | 12.67 | KM Plot |
| THCA | rs76431798 | chr6:24403559 | C/T | 5.55E-15 | 487 | 16.38 | 14.85 | 11.07 | KM Plot |
| THCA | rs7643525 | chr3:155609279 | A/G | 0.000207 | 487 | 9 | 14.63 | 16.57 | KM Plot |
| THCA | rs76459999 | chr5:81285764 | C/T | 8.87E-5 | 486 | 15.9 | 16.3 | 17.97 | KM Plot |
| THCA | rs76475374 | chr3:96801339 | T/C | 2.8E-10 | 486 | 15.9 | 15.17 | 24.65 | KM Plot |
| THCA | rs76480826 | chr1:220734490 | A/G | 8.56E-5 | 489 | 15.9 | 16.15 | 16.97 | KM Plot |
| THCA | rs76483455 | chr1:91820446 | C/T | 7.73E-6 | 490 | 15.68 | 16.97 | 17.77 | KM Plot |
| THCA | rs7648890 | chr3:111273326 | G/T | 3.36E-5 | 486 | 16.3 | 14.7 | 16.55 | KM Plot |
| THCA | rs7649385 | chr3:111267968 | C/T | 6.56E-5 | 488 | 16.27 | 14.97 | 16.55 | KM Plot |
| THCA | rs76497563 | chr6:25339016 | A/C | 8.44E-15 | 484 | 15.15 | 25.38 | 16.72 | KM Plot |
| THCA | rs7650055 | chr3:53992218 | C/T | 5.0E-15 | 485 | 15.9 | 17.65 | 10.35 | KM Plot |
| THCA | rs765224 | chr1:184015663 | G/A | 1.78E-13 | 484 | 15.23 | 17.7 | 20.08 | KM Plot |